CXCL6

Mammalian protein found in Homo sapiens
CXCL6
Identifiers
AliasesCXCL6, CKA-3, GCP-2, GCP2, SCYB6, C-X-C motif chemokine ligand 6
External IDsOMIM: 138965; MGI: 1096868; HomoloGene: 88671; GeneCards: CXCL6; OMA:CXCL6 - orthologs
Gene location (Human)
Chromosome 4 (human)
Chr.Chromosome 4 (human)[1]
Chromosome 4 (human)
Genomic location for CXCL6
Genomic location for CXCL6
Band4q13.3Start73,836,640 bp[1]
End73,849,064 bp[1]
Gene location (Mouse)
Chromosome 5 (mouse)
Chr.Chromosome 5 (mouse)[2]
Chromosome 5 (mouse)
Genomic location for CXCL6
Genomic location for CXCL6
Band5 E1|5 44.78 cMStart90,907,219 bp[2]
End90,909,483 bp[2]
RNA expression pattern
Bgee
HumanMouse (ortholog)
Top expressed in
  • bronchial epithelial cell

  • palpebral conjunctiva

  • spleen

  • olfactory zone of nasal mucosa

  • cartilage tissue

  • islet of Langerhans

  • beta cell

  • parietal pleura

  • jejunal mucosa

  • sperm
Top expressed in
  • right lobe of liver

  • cervix

  • endothelial cell of lymphatic vessel

  • trachea

  • respiratory epithelium

  • olfactory epithelium

  • mandibular molars

  • embryo

  • embryo

  • conjunctival fornix
More reference expression data
BioGPS
n/a
Gene ontology
Molecular function
  • cytokine activity
  • CXCR chemokine receptor binding
  • heparin binding
  • chemokine activity
  • protein binding
Cellular component
  • extracellular region
  • extracellular space
Biological process
  • chemotaxis
  • cell-cell signaling
  • chemokine-mediated signaling pathway
  • regulation of cell population proliferation
  • defense response to bacterium
  • signal transduction
  • neutrophil mediated immunity
  • defense response
  • positive regulation of neutrophil chemotaxis
  • neutrophil chemotaxis
  • neutrophil activation
  • antimicrobial humoral immune response mediated by antimicrobial peptide
  • cellular response to lipopolysaccharide
  • inflammatory response
  • immune response
  • regulation of signaling receptor activity
  • G protein-coupled receptor signaling pathway
  • leukocyte homeostasis
  • leukocyte chemotaxis
  • response to lipopolysaccharide
  • regulation of chemokine production
  • regulation of neutrophil mediated killing of gram-negative bacterium
Sources:Amigo / QuickGO
Orthologs
SpeciesHumanMouse
Entrez

6372

20311

Ensembl

ENSG00000124875

ENSMUSG00000029371

UniProt

P80162

P50228

RefSeq (mRNA)

NM_002993

NM_009141

RefSeq (protein)

NP_002984

NP_033167

Location (UCSC)Chr 4: 73.84 – 73.85 MbChr 5: 90.91 – 90.91 Mb
PubMed search[3][4]
Wikidata
View/Edit HumanView/Edit Mouse
chemokine (C-X-C motif) ligand 6 (granulocyte chemotactic protein 2)
Identifiers
SymbolCXCL6
Alt. symbolsSCYB6, GCP-2, CKA-3
NCBI gene6372
HGNC10643
OMIM138965
RefSeqNM_002993
UniProtP80162
Other data
LocusChr. 4 q21
Search for
StructuresSwiss-model
DomainsInterPro

Chemokine (C-X-C motif) ligand 6 (CXCL6) is a small cytokine belonging to the CXC chemokine family that is also known as granulocyte chemotactic protein 2 (GCP-2). As its former name suggests, CXCL6 is a chemoattractant for neutrophilic granulocytes.[5][6] It elicits its chemotactic effects by interacting with the chemokine receptors CXCR1 and CXCR2.[6] The gene for CXCL6 is located on human chromosome 4 in a cluster with other CXC chemokine genes.[7][8]

References

  1. ^ a b c GRCh38: Ensembl release 89: ENSG00000124875 – Ensembl, May 2017
  2. ^ a b c GRCm38: Ensembl release 89: ENSMUSG00000029371 – Ensembl, May 2017
  3. ^ "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. ^ "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. ^ Proost P, Wuyts A, Conings R, Lenaerts J, Billiau A, Opdenakker G, Van Damme J (1993). "Human and bovine granulocyte chemotactic protein-2: complete amino acid sequence and functional characterization as chemokines". Biochemistry. 32 (38): 10170–7. doi:10.1021/bi00089a037. PMID 8399143.
  6. ^ a b Wuyts A, Van Osselaer N, Haelens A, Samson I, Herdewijn P, Ben-Baruch A, Oppenheim J, Proost P, Van Damme J (1997). "Characterization of synthetic human granulocyte chemotactic protein 2: usage of chemokine receptors CXCR1 and CXCR2 and in vivo inflammatory properties". Biochemistry. 36 (9): 2716–23. doi:10.1021/bi961999z. PMID 9054580.
  7. ^ Modi W, Chen Z (1998). "Localization of the human CXC chemokine subfamily on the long arm of chromosome 4 using radiation hybrids". Genomics. 47 (1): 136–9. doi:10.1006/geno.1997.5100. PMID 9465307.
  8. ^ O'Donovan N, Galvin M, Morgan J (1999). "Physical mapping of the CXC chemokine locus on human chromosome 4". Cytogenet Cell Genet. 84 (1–2): 39–42. doi:10.1159/000015209. PMID 10343098. S2CID 8087808.


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By family
Chemokine
CCL
CXCL
CX3CL
XCL
TNF
Interleukin
Type I
(grouped by
receptor
subunit)
γ chain
β chain
IL6 like/gp130
IL12 family/IL12RB1
Other
Type II
IL10 family
Interferon
I
II
Ig superfamily
IL17 family
Other
By function/
cell
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CC
CCR1
CCR2
CCR3
CCR4
CCR5
CCR6
CCR7
CCR8
CCR9
CCR10
CCR11
Ungrouped
CXC
CXCR1
(IL-8Rα)
  • Antagonists: Navarixin
  • NAMs: Ladarixin
  • Reparixin (repertaxin)
CXCR2
(IL-8Rβ)
  • Antagonists: Danirixin
  • Elubrixin
  • Navarixin
  • NAMs: Ladarixin
  • Reparixin (repertaxin)
CXCR3
CXCR4
CXCR5
CXCR6
CXCR7
C (XC)
XCR1
CX3C
CX3CR1
Others
CCBP2
CMKLR1


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